Applied Computational Genomics Team (@acg-team)
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acg-team

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  • Stars
    star
    56
  • Global Org. Rank 75,715 (Top 25 %)
  • Registered over 7 years ago
  • Most used languages
    C++
         36.4 %
    Python
         27.3 %
    Rust
         18.2 %
    R
         9.1 %
    MATLAB
         9.1 %
  • Location πŸ‡¨πŸ‡­ Switzerland
  • Country Total Rank 3,313
  • Country Ranking
    Rust
         300
    R
         431
    MATLAB
         436
    C++
         454
    Python
         975

Top repositories

1

tral

Tandem Repeat Annotation Library
Python
24
star
2

ProGraphMSA

ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. Fork of ProGraphMSA+TR from https://sourceforge.net/projects/prographmsa
C++
9
star
3

bpp-arpip

ARPIP: Ancestral sequence Reconstruction under PIP
C++
7
star
4

webSTR-API

WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
Python
5
star
5

ProPIP

C++
4
star
6

rust-phylo

Phylo library in Rust
Rust
2
star
7

MEDOBO

Python
1
star
8

STFT-matlab

MATLAB
1
star
9

twins_microbiome_pipeline

Bioinformatics processing of raw Illumina reads for microbiome analysis of twins (dada2)
R
1
star
10

old_ProPIP

Progressive Multiple Sequence Alignment with Indel Evolution
C++
1
star
11

rust-indelMaP

IndelMaP algorithm implementation in Rust
Rust
1
star