Zymo Research (@Zymo-Research)
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Top repositories

1

figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
Python
80
star
2

docker-bcl2fastq

Docker container for Illumina bcl2fastq
C
10
star
3

miqScore16SPublic

Repo for public-facing 16s miq score
HTML
8
star
4

zymoTransmit

Python script to facilitate uploading COVID-19 test results to departments of health
Python
8
star
5

miqScoreShotgunPublic

Repo for public-facing shotgun MIQ score
HTML
6
star
6

VirSieve

Run manager for the VirSieve Pipeline by Zymo Research
4
star
7

aladdin-integration

Documentation and tools to develop pipelines that can be run on Aladdin
2
star
8

pipeline-resources

Repository for resources and documentation files of Zymo bioinformatics pipelines
HTML
2
star
9

miqScoreNGSReadCountPublic

Public repo for miq scoring package for NGS reads
Python
2
star
10

docker-bcl-convert

Docker container for bcl-convert, an Illumina demultiplexing program
Dockerfile
2
star
11

service-pipeline-documentation

Public repository to educate customers about bioinformatics pipelines and reports for services we offer
HTML
2
star
12

aladdin-rnaseq

Public repository for RNAseq pipeline to be run on Aladdin platform
Python
2
star
13

aladdin-miqScore16S

Nextflow pipeline that calculates MIQ score. Compatible with Aladdin platform
Nextflow
1
star
14

ncbi-pmc-scraper

Jupyter Notebook
1
star
15

aladdin-smrnaseq

Public repository for smRNAseq pipeline compatible with Aladdin platform
Python
1
star
16

VirSieveGATK

GATK functionality for the VirSieve Pipeline by Zymo Research
Python
1
star
17

mirror-seq

The bioinformatics analysis program for Mirror-Seq
Python
1
star