YangLab@HKUST (@YangLabHKUST)

Top repositories

1

STitch3D

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
Python
37
star
2

SpatialScope

A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
Python
31
star
3

Portal

Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
Python
30
star
4

MR-APSS

Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
R
29
star
5

XPASS

Cross-population analysis using GWAS summary statistics
R
15
star
6

DGLSB

Deep Generative Learning via Schrödinger Bridge
Python
15
star
7

LOG-TRAM

Python
9
star
8

XMAP

HTML
7
star
9

PALM

Python
5
star
10

mfair

mfair: Matrix Factorization with Auxiliary Information in R
R
5
star
11

FLAG

Flexible and Accurate Methods for Estimation and Inference of Gaussian Graphical Models with Applications
Jupyter Notebook
4
star
12

MATH-4432-Statistical-Machine-Learning

Tutorials for MATH 4432 Statistical Machine Learning, HKUST, Fall 2023
HTML
4
star
13

3DVesselSegNet

hybrid representation learning approach for fully automatic and template-free vessel centerline extraction
Jupyter Notebook
4
star
14

MRbenchmarking

R
3
star
15

XPA

Cross-population analysis using the individual-level GWAS data
C++
2
star
16

VGrow-Pg

A tensorflow implementation of VGrow by using progressive growing method.
Python
2
star
17

MRAPSS_RealDataAnalysis_reproduce

R code for reproduce real data analysis in MRAPSS paper.
HTML
1
star
18

ST_alignment_and_integration

Measurement and comparison of several slices aligning methods and data integrating mathods for spatial transcriptomics data using several ST datasets.
Python
1
star
19

LSMM

Efficient statistical approach to integrating functional annotations with genome-wide association studies
C++
1
star