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YangLab

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Top repositories

1

CIRCexplorer2

circular RNA analysis toolset
Python
76
star
2

CIRCexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
Python
60
star
3

CLEAR

direct comparison of circular and linear RNA expression
Python
20
star
4

bamTobw

Convert BAM files to bigWig files with a simple command
Shell
19
star
5

SCAPTURE

Shell
16
star
6

RADAR

RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
Perl
11
star
7

RNAlight

a machine learning model to identify nucleotide features determining RNA subcellular localization
Jupyter Notebook
11
star
8

CDCscreen

Source code for the computational analysis of functional circular RNAs screening using the CRISPR-Cas13 system
Shell
7
star
9

CSI

Complementary Sequence Index (CSI)
Python
6
star
10

CIRCfinder

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)
Python
5
star
11

bsRNA-seq-m5C

Pipeline for m5C calling.
Perl
5
star
12

TERate

TERate is a computational pipeline to measure transcription elongation rates (TERs) with 4sUDRB-Seq.
Shell
5
star
13

BEIDOU

Base/Prime Editor Induced DNA Off-target site identification Unified toolkit
Shell
5
star
14

CFBI

CFBI is custom Perl and Shell scripts for base substitution and indel frequencies calculation.
Perl
3
star
15

CIRCshapemapper

Python
2
star
16

CIRCpseudo

Pipeline for circRNA-derived pseudogenes
Perl
2
star