@Xinglab
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Xinglab

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  • Stars
    star
    783
  • Global Org. Rank 18,113 (Top 6 %)
  • Registered about 9 years ago
  • Most used languages
    Python
         63.3 %
    C
         10.0 %
    R
         10.0 %
    HTML
         6.7 %
    C++
         3.3 %
    Jupyter Notebook
         3.3 %
    Objective-J     3.3 %

Top repositories

1

rmats-turbo

C++
214
star
2

rmats2sashimiplot

Python
128
star
3

DARTS

Deep-learning Augmented RNA-seq analysis of Transcript Splicing
Python
108
star
4

espresso

Python
52
star
5

CLAM

CLIP-seq Analysis of Multi-mapped reads
Python
28
star
6

lr2rmats

Long read to rMATS
C
27
star
7

IRIS

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
Python
22
star
8

rMATS-long

Python
21
star
9

rMATS-DVR

Python
18
star
10

PEGASAS

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Python
18
star
11

TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
C
18
star
12

rPGA

Python
13
star
13

rMATS-STAT

Python
13
star
14

abPOA

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
C
13
star
15

GTEx-brain-sQTL

R
12
star
16

SEASTAR

SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
Python
12
star
17

PAIRADISE

Paired Replicate Analysis of Allelic Differential Splicing Events
Python
11
star
18

Myc-regulated_AS_PrCa_paper

Scripts for plotting figures and running analysis throughout the manuscript
R
11
star
19

isoCirc

isoCirc
Python
10
star
20

TEQUILA-seq

The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.
Python
8
star
21

GLiMMPS

GLiMMPS
R
6
star
22

SURVIV

Survival Analysis of mRNA Isoform Variation
Python
6
star
23

siri

Python
4
star
24

ASPRIN

Python
3
star
25

intron-retention-paper

Jupyter Notebook
3
star
26

proteoseq

Proteotranscriptome pipeline
Objective-J
2
star
27

SQUID

Stringent Quantitation of Unspliced Intron by Deep-sequencing
Python
2
star
28

Xinglab.github.io

HTML
1
star
29

iDARTS

Predicting splicing effects of human genome variants from sequences
Python
1
star
30

rmats-turbo-tutorial

HTML
1
star