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WormBase

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wormbase-pipeline

Wormbase Build Pipeline

wormbase_rest

This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.

pseudoace

Modelling the WormBase ACeDB database in datomic.

wormbase-architecture

website-mobile

Mobile version of the WormBase website

website-classic

The original version of the WormBase website.

wormbase-curation

Scripts and documentation related to WormBase curation efforts

db-prototypes

Prototypes for the database migration project at WormBase.

wbps-expression

Transcriptomic data for WormBase ParaSite

AcePerl

Ace.pm - Perl interface to ACEDB databases

website-intermine-sources-DEPRECATED

The Intermine instance at WormBase

wormcells-viz

Visualization tools for C. elegans single cell RNA sequencing data

website-public

WormBase webiste source code public mirror

textpresso_classifiers

Textpresso Document Classifier library and scripts

scdefg

A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.

wbtools

Interface to WB curation data, with corpus management and NLP functions

website-intermine

wormicloud

Interaction data analysis with word clouds

website-intermine-master-DEPRECATED

Master configuration and model files for Intermine at WormBase

ky-projects

Karen's GSA and curation scripts

automated_descriptions

automated concise descriptions

hydraconference_2023

Course material for WormBase ParaSite's workshop at The Hydra Helminth Conference that took place in Hydra, Greece (September 2022).

wormmine-bio-sources

caltech-curation

genedesc_generator

Automated gene descriptions generator for model organism databases

SObA

Graph Summary of Ontology-based Annotation

website-genome-browsers

names

Names and identifiers service for facilitating collaboration between curation databases

TableExtractionFromPDF

Extacting tables from PDFs using AWS textract

website-biomart

The BioMart instance at WormBase

ACKnowledge

Author Curation to Knowledgebases

tpc-monitors

Monitor Textpresso Pipelines and Services with Prometheus and Grafana

textpresso

Repository for TextPressoCentral

ideas-list

Ideas List for WomBase GSoC 2018

wormmine_help

xvi_iss_2022

Course material for WormBase ParaSite's course at the XVI International Symposium on Schistosomiasis that took place in Ouro Preto, Brazil (November 2022).

wormmine_testing

Small web app that automatically tests releases

caltech-curation-services

Modular curation services for Caltech WormBase data

website-gbrowse2-support

Configuration and miscellaneous support files for our GBrowse2 installation

parasite-workshops

Materials for WormBase ParaSite workshops