slurmR
slurmR: A Lightweight Wrapper for Slurmsoftware-dev
Coding Standards for the USC Biostats grouppartition
A fast and flexible framework for data reduction in Rrbootcamp
R boot camp: Scientific Computingfmcmc
A friendly MCMC frameworkPM566
USC's Introduction to Health Data Sciencexrnet
R Package for Hierarchical Regularized Regression to Incorporate External DatahJAM
hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.classy
Simple example of C++ Classes and External Pointers with RcppPM520
PM520 Advanced Statistical Computingslurmr-workshop
Workshop on HPC with Slurm, R, and the slurmR packageGxEScanR
R version of GxEScanbarry
barry: Your go-to motif accountantLUCIDus-old
Latent Unknown Clustering with Integrated DataLUCIDus
the new version of LUCIDaphylo
Statistical inference of genetic functions in phylogenetic treesjsPhyloSVG
htmlwidgets for the jsPhyloSVG javascript libraryr-parallel-benchmark
Using Rcpp with OpenMP (parfor and SIMD)docker-example
BHRM
An R function for mixtures analysis in environmental epidemiology.fdrci
Permutation-Based FDR Point and Confidence Interval EstimationHiLDA
📦 An R package for inferring the mutational exposures difference between groups.cit
uscrbootcamp
An R package to help install the USC R Bootcamp: Intro to Data Analysiscausnet
Find globally optimal causal networkextendGeneAnnotations
iMutSig
iMutSig: a web application to identify the most similar mutational signature using shinyMethylation-variability
ENmixUSC
handbook
software-dev-site
figi
All code used in FIGI analyses, plots, documentation, presentations.LinGxEScanR
laerug-hpc-w-r-nov2018
LAsBEST
Repository of USC's LA's BEST program. https://lasbest.usc.edu/aws-notes
Random notes on how to use AWS for our researchpruner
pruner: Implementing the Felsenstein's Tree Pruning algorithmPM570-Colab
Repository for USC PM570 - Statistical Methods in Human Geneticsresearch-pipelines
Happy Scientist Seminar: Research PipelinesPm566-syllabus-outline
Our latest thoughts on what should be covered in a new PM566 course (Intro to Health Data Science)bayesnetworks
C++ program to fit Bayesian networks, illustrated with simulated data from P3 of our IMAGE grant applicationbadges
Badges for USC's Biostats repositoriesBinaryDosage
Converts VCF files to a binary formatAnnoQR
R client wrap for AnnoQ APIACDC
Association of covariance to detect differential co-expressionLove Open Source and this site? Check out how you can help us