ANR Transipedia (@Transipedia)
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Transipedia

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  • Stars
    star
    49
  • Global Org. Rank 80,443 (Top 26 %)
  • Registered over 7 years ago
  • Most used languages
    Python
         33.3 %
    R
         22.2 %
    C
         11.1 %
    C++
         11.1 %
    Shell
         11.1 %
    Perl
         11.1 %

Top repositories

1

dekupl

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
15
star
2

dekupl-run

Identify differentially expressed k-mers between RNA-Seq datasets
R
11
star
3

KaMRaT

C++
11
star
4

dekupl-annotation

Annotate DE contigs identified by DE-kupl.
Perl
4
star
5

Annotate-contigs

Generalized contig annotation (dekupl-annot 2.0 in python)
Python
3
star
6

dekupl-joinCounts

Join multiple k-mer abundance files into a single matrix.
C
2
star
7

KamScan

A simple Python script for scanning a kmer count matrix and select lines with desired statistics
Python
2
star
8

dekupl-viewer

Shiny app to interactively visualize DE-kupl Annotation output
R
2
star
9

meta-bam

Sample reads from fastq files - align to genome - makes a "meta-bam" file.
Shell
1
star
10

dekupl-lung-cancer-inter-cohort

Replicability of dekupl and gene-level predictions across 2 independent lung cancer cohorts
Python
1
star