Explore @TGAC Open Source projects

Earlham Institute (@TGAC)

TGAC

Stars
399
Global Org. Rank 27,393 (Top 9 %)
Registered over 12 years ago
Most used languages

C
24.1 %

Python
20.7 %

JavaScript
13.8 %

R
10.3 %

C++
6.9 %

Ruby
6.9 %

Java
3.4 %

Perl
3.4 %

CSS
3.4 %

HTML
3.4 %

MATLAB
3.4 %
Location 🇬🇧 United Kingdom
Country Total Rank 3,501
Country Ranking

R
230

Perl
232

C++
288

MATLAB
794

C
904

Java
1,091

Ruby
1,514

Python
3,880

JavaScript
4,228

CSS
4,458

HTML
9,442

KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

RAMPART

A configurable de novo assembly pipeline

361Division

361 Division - Scientific Training, Education and Learning

kontaminant

Tool to look for contaminants, with a kmer database.

earlham-galaxytools

Galaxy tools and workflows developed at the Earlham Institute

TGACBrowser

TGAC's Genome Browser

statsdb

lncRNA-analysis

Aequatus

Earlham Institute's Synteny Browser

brassica

Brassica Information Portal

MultiPEN

SHSY5Y_differentiation

Scripts and data files accompanying Wright et al

grassroots-service-polymarker

The Polymarker service for the Grassroots infrastructure.

grassroots-service-field-trial

A Grassroots service for storing the data for field trials

irods_bash_completer

A tool to allow the iRODS client icommands to have auto-complete functionality within Bash

grassroots-service-field-pathogenomics

The Grassroots service for geolocation and dates of samples of crop pathogenomic data

COPO-documentation

COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.

Mulea

grassroots-service-blast

The BLAST services for the Grassroots infrastructure

grassroots-client-frictionless-data

A tool to extract the resources from a Grassroots Frictionless Data Package

grassroots-api

The Grassroots API - lightweight infrastructure for data federation, analysis and search

2016-03-08-TGAC

Aequatus-Docker

grassroots-core

The core libraries of the Grassroots infratructure

SalmoNet

SalmoNet website

2023-02-07-earlham

https://tgac.github.io/2023-02-07-earlham/

Mozfest2015

Python/Django skeleton project for user driven ontology creation session at Mozfest2015

BIP_training

SapioExpampleProject

Earlham Data Portal

knowledge_base

EI specific documentation (induction materials, tool/method specific advice); contributions made by EI users.

COPO-production

mainline production repository for COPO