Systems Biology Lab, Vrije Universiteit Amsterdam (@SystemsBioinformatics)
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SystemsBioinformatics

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  • Stars
    star
    74
  • Global Org. Rank 66,506 (Top 22 %)
  • Registered over 9 years ago
  • Most used languages
    Python
         85.7 %
    HTML
         14.3 %
  • Location 🇳🇱 Netherlands
  • Country Total Rank 4,371
  • Country Ranking
    Python
         750
    HTML
         1,170

Top repositories

1

stochpy

StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
Python
39
star
2

cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.
Python
17
star
3

ecmtool

Uncover organisms' metabolic blueprints
Python
12
star
4

dynamic-community-fba

Dynamic Community FBA repository
Python
3
star
5

parcr

Construct parser combinators in R
HTML
3
star
6

cbmpy-metadraft

CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
Python
1
star
7

elementary-mode-based-FBA-rationale

Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
Python
1
star