Storey Lab (@StoreyLab)
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StoreyLab

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  • Stars
    star
    373
  • Global Org. Rank 28,239 (Top 10 %)
  • Registered about 10 years ago
  • Most used languages
    R
         77.8 %
    C++
         5.6 %
    Python
         5.6 %
    HTML
         5.6 %
    q     5.6 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 18,726
  • Country Ranking
    q     14
    R
         202
    C++
         4,082

Top repositories

1

qvalue

R package to estimate q-values and false discovery rate quantities.
R
107
star
2

biobroom

Tidy up computational biology objects
R
49
star
3

reading

A collection of papers and books that Storey Lab members should read and others may find useful
47
star
4

terastructure

TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.
C++
47
star
5

edge

R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
R
20
star
6

subSeq

Subsampling of high-throughput sequencing count data
R
19
star
7

popkin

R package to estimate kinship and FST from SNP data
R
19
star
8

lfa

logistic factor analysis
R
15
star
9

superSeq

Assessing the increase in power from increasing read depth in a given RNA-Seq study
R
13
star
10

bnpsd

R package to model and simulate admixed populations
R
8
star
11

alstructure

An R package that implements the ALStructure algorithm for estimating the admixture model of genetic population structure
HTML
8
star
12

gcatest

genotype conditional association test
R
5
star
13

fFDR

Functional FDR package
R
5
star
14

gcat

This package has been renamed gcatest: https://github.com/StoreyLab/gcatest
R
3
star
15

sparta

Dividing RNA-Seq reads based on their ancestral genotype
Python
3
star
16

human-differentiation-manuscript

Details on the data analysis for "New kinship and F_ST estimates reveal higher levels of differentiation in the global human population" by Ochoa and Storey
q
3
star
17

superSeq-manuscript

R
2
star
18

ALStructure-manuscript

Data and code utilized in "A likelihood-free estimator of population structure bridging admixture models and principal components analysis", by Cabreros and Storey
R
1
star
19

factorial-MA-RS

Supplementary Materials for the manuscript "A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays" by Robinson, Wang, and Storey
R
1
star