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SPMIC (@SPMIC-UoN)

SPMIC-UoN

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Location 🇬🇧 United Kingdom
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BRC_Pipeline

The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be applied to different modalities such as T1w/T2w MRI, diffusion MRI, and functional MRI datasets.

XTRACT_atlases

WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque brain.

cudimot

CUDA Diffusion Modelling Toolbox

ON-Harmony_UKBB_pipeline

Cross-scanner version of UK-Biobank Pipeline (v1)

EDDEN

Jupyter Notebook

xnat-dicomqc

XNAT container script to do simple configurable tag-based QC on scan DICOMs

XTRACT_Macaque_MultiTemplate

XTRACT protocols for the Macaque in 5 template spaces (F99, D99, NMTv2.0, INIA, Yerkes19).

xnat-imgqc

XNAT container plugin to generate generic image-based QC metrics

3T_MRI_harmonisation

Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".

Jupyter Notebook

rodent_anat

Anatomical pipeline for rodent MRI based on fsl_anat interface

xtract