@RabadanLab
Guthub

RabadanLab

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq
Python
113
star
2

randomly

A Library for Denoising Single-Cell Data with Random Matrix Theory
Jupyter Notebook
36
star
3

Pegasus

Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
Java
11
star
4

TOBI

TOBI predicts somatic variants from .vcf or .bam input
R
7
star
5

ph_datasets

Persistent Homology Datasets
6
star
6

Bootstrap-Analysis-Arriaga-Nature-Cancer-2020

Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
R
2
star
7

mage-pipeline

MAGE - Multilevel Analysis of Gene Expression
R
1
star
8

pamler

Shell
1
star
9

MITKats

The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.
C++
1
star
10

Chek2_scRNAseq

The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.
Jupyter Notebook
1
star
11

melamed_comorbidity

Code for "Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes". View more information in the ipython notebook
Python
1
star