1

SYNY

The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.

Perl

29

2

3DFI

The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

Perl

17

3

SSRG

The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

Perl

4

4

A2GB

A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.

Perl

3

5

Publication_scripts

This repository contains scripts from published or submitted manuscripts.

Perl

3

6

Old

Contains old miscellaneous scripts for genomics. No longer maintained.

Perl

1

7

ID16S

This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.

Perl

1

8

QueGO

The QueGO pipeline identifies potential homologs to proteins related to specific functionality.

Perl

1

9

A2A

The A2A pipeline guides users from genome assembly to annotations.

Python

1