Explore @PathwayCommons Open Source projects

Pathway Commons (@PathwayCommons)

PathwayCommons

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Registered over 12 years ago
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Location 🇨🇦 Canada
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Java
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cytoscape-sbgn-stylesheet

View biological networks via Cytoscape.js and sbgn-ml

factoid

A project to capture biological pathway data from academic papers

semantic-search

A simple semantic search engine for scientific papers.

chibe

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

grounding-search

A biological entity grounding search service

pcviz

Pathway Commons Bio Network Visualizer

biojs-pcviz

BioJS component for PCViz

cpath2

Biological pathway data integration and access platform (Pathway Commons)

sbgnml-to-cytoscape

An npm module that converts xml based SBGN files to JSON for Cytoscape.js

guide

Resource for pathway analysis and Pathway Commons

about

Pathway Commons Home Page (/about/)

pathway-commons-client

A library to facilitate access to the Pathway Commons 2 API

ncbiutils

A wrapper for retrieving records from PubMed

app-ui

Web UI for accessing Pathway Commons data

CyPath2

Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.

pathways-search

A web app to search pathways in Pathway Commons

drugbank-to-biopax

DrugBank to BioPAX Level3 data converter.

sifgraph-server

Pathway Commons binary SIF graph web service

sifgraph

Modeling and querying support for SIF graphs

hyper-recent

Hyper-recent article feed

ctd-to-biopax

Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.

reconx-to-biopax

SBML to BioPAX Level3 converter, specific to the Recon2 data.

mirtarbase-to-biopax

MiRTarBase to BioPAX Level3 data converter.