Uppsala University, Department of Medical Sciences, Molecular Precision Medicine (@Molmed)
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Molmed

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Top repositories

1

checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Python
25
star
2

Nordlund-Backlin-2013

Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia
R
6
star
3

clarity-ext

Extensions for Clarity
Python
6
star
4

emil

Developer-friendly predictive modeling framework
R
4
star
5

hercules

Scala
2
star
6

sisyphus

Pipeline scripts for processing and QC of Illumina HiSeq and MiSeq data
Perl
2
star
7

epiqc

R
2
star
8

Nordlund-ALL-subtyping

DNA methylation-based subtype prediction for pediatric acute lymphoblastic leukemia
R
2
star
9

seqreports

This is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.
Python
1
star
10

Berglund-Lindqvist-2013

Python
1
star
11

projman_filler

Application used to populate ProjMan with runfolder data
Python
1
star
12

fastq_demux

Demultiplex Illumina FASTQ files
Python
1
star
13

elk-herder

CLI for developing ELK configurations and groks
Python
1
star
14

Backlin-2017

R
1
star
15

role_hercules

Public Ansible role for deploying Hercules
1
star
16

Krali-Palle_2021

Jupyter Notebook
1
star