Explore @LorenFrankLab Open Source projects

Loren Frank Lab at UCSF (@LorenFrankLab)

LorenFrankLab

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115
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Registered over 6 years ago
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50.0 %

Python
33.3 %

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Location 🇺🇸 United States
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Jupyter Notebook
1,615

MATLAB
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spyglass

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

Jupyter Notebook

track_linearization

Linearize 2D position to 1D using an HMM

trodes_to_nwb

Converts data from SpikeGadgets to the NWB Data Format

Jupyter Notebook

position_tools

Tools for calculating smoothed 2D position, speed, head direction

rec_to_binaries

A python package that converts SpikeGadgets rec files in the Frank lab directory format to more useable binaries with the same directory format.

Jupyter Notebook

fsgui

Feedback and stimulation gui for real time experiment control

Gillespie_Neuron_2021

analysis code for Gillespie et al, Neuron 2021

Joshi_et_al_2023

Analysis code for Joshi et al 2023 Dynamic synchronization between hippocampal representations and stepping

spyglass-paper

Code supporting Lee, Denovellis et al. (2024)

Jupyter Notebook

non_local_detector

Jupyter Notebook

franklabnwb

Example notebook and related code to create NWB files from trodes .rec and associated files assuming franklab compatible naming system

Jupyter Notebook

realtime_decoder