Lexogen (@Lexogen-Tools)
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Lexogen-Tools

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  • Stars
    star
    4
  • Global Org. Rank 216,279 (Top 69 %)
  • Registered over 4 years ago
  • Most used languages
    Python
         50.0 %
    C++
         25.0 %
    Shell
         25.0 %
  • Location ๐Ÿ‡ฆ๐Ÿ‡น Austria
  • Country Total Rank 4,932
  • Country Ranking
    Shell
         486
    C++
         516
    Python
         544

Top repositories

1

idemux

Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.
Python
8
star
2

SIRVsuite

SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.
Python
8
star
3

idemuxcpp

iDemux is an all-in-one command line tool that can be used for both demultiplexing and error correction of FASTQ files. It enables demultiplexing of i1 inline barcodes of Lexogenโ€™s QuantSeq-Pool as well as demultiplexing of i7 and/or i5 indices of any other RNA-Seq library prep. iDemux can also be used for superior error correction of RNA-Seq libraries generated with Lexogenโ€™s UDI 12 nt Unique Dual Indices. This C++ version is faster than the Python version but requires a certain proficiency in command line tool handling.
C++
5
star
4

quantseqpool_analysis

Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
Shell
2
star