Explore @LREN-CHUV Open Source projects

LREN CHUV (@LREN-CHUV)

LREN-CHUV

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Location 🇨🇭 Switzerland
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ansible-airflow

Ansible role for the installation of Apache Airflow

airflow-imaging-plugins

Set of plugins helping to work with imaging data in Airflow.

woken

An orchestration platform for Docker containers running data mining algorithms

docker-alembic

Docker image for Alembic database migrations

data-tracking

This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.

python-base-docker-images

Collection of Docker images for Python, including the base images created for the Algorithm Factory / Woken

algorithm-repository

Repository of functions or algorithms packaged (with Docker) for Algorithm Factory/Woken

mri-preprocessing-pipeline

MRI preprocessing pipeline

MSPM

Mass Multivariate methods for neurimaging data

woken-validation

Cross-validation module for Woken, using Spark and PFA

MLM

Mulivariate analysis for Neuroimaging data.

data-factory-airflow-dags

DAGs adapting the MRI preprocessing pipeline to Airflow

r-mip-adaptor

R helper functions to connect to a database via JDBC

pfa-validator

Validation of the PFA model and its predictive algorithm

portal-backend

Backend for the MIP portal

mri-preprocessing-pipeline-light

Light version of mri-preprocessing-pipeline, for installation

hbpsummarystats

Summay statistics used to draw a boxplot over a dataset

docker-cbrain

Docker images for CBrain

woken-db-setup

Creation and control scripts for the Postgres database used to store analytics results in the MIP

i2b2-import

This library provides functions to import data into an I2B2 DB schema

data-db-setup

Setup for the database containing features data

docker-airflow-test-py35

Airflow with nosetests running on Python 3.5

woken-messages

Shared library containing the API and messages used in Woken applications

mip-microservices-infrastructure

Generic version of the scripts used to deploy the Medical Informatics Platform

r-base-docker-images

Docker images used to integrate the algorithms provided for the Medical Informatics Platform (MIP)