JEFworks Lab (@JEFworks-Lab)
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JEFworks-Lab

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  • Stars
    star
    470
  • Global Org. Rank 24,765 (Top 8 %)
  • Registered over 4 years ago
  • Most used languages
    R
         46.2 %
    JavaScript
         30.8 %
    HTML
         15.4 %
    Jupyter Notebook
         7.7 %

Top repositories

1

STdeconvolve

Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
R
99
star
2

HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
R
95
star
3

STalign

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
HTML
63
star
4

MERINGUE

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
R
57
star
5

veloviz

RNA-velocity informed embeddings for visualizing cellular trajectories
R
40
star
6

MERmaid

WebGL-based viewer for spatially-resolved transcriptomics data
JavaScript
26
star
7

genomic-data-visualization-2024

Course website for Genomic Data Visualization 2024
JavaScript
22
star
8

R-style-guide

Best practices for readable, sharable, and verifiable R code
HTML
17
star
9

genomic-data-visualization-2022

Course website for Genomic Data Visualization 2022
JavaScript
16
star
10

SEraster

Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
R
16
star
11

CRAWDAD

Cell-type Relationship Analysis Workflow Done Across Distances
R
12
star
12

genomic-data-visualization-2023

Course website for Genomic Data Visualization 2023
JavaScript
9
star
13

jefworks-lab.github.io

Jupyter Notebook
4
star