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Imaging Data Commons (@ImagingDataCommons)

ImagingDataCommons

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highdicom

High-level DICOM abstractions for the Python programming language

slim

Interoperable web-based slide microscopy viewer and annotation tool

dicomweb-client

Python client for DICOMweb RESTful services

dicom-microscopy-viewer

Web-based DICOM slide microscopy viewer library

IDC-Tutorials

Self-guided notebook tutorials to help get started with using IDC

Jupyter Notebook

libdicom

C library for reading DICOM files

pyplastimatch

Python wrapper for Plastimatch.

Jupyter Notebook

idc-index

Python package to simplify access to the data available from NCI Imaging Data Commons

dicomslide

Python library for reading whole slide images in DICOM format

nnU-Net-BPR-annotations

Code accompanying this dataset: Krishnaswamy, D., Bontempi, D., Clunie, D., Aerts, H. & Fedorov, A. AI-derived annotations for the NLST and NSCLC-Radiomics computed tomography imaging collections. (2022). doi:10.5281/zenodo.7473970

Jupyter Notebook

idc-wsi-conversion

idc-vertebrae-ct-segmentation

Jupyter Notebook

IDC-Docs

Source for IDC documentation

SlicerIDCBrowser

A 3D Slicer extension to support access to the content of NCI Imaging Data Commons

etl_flow

idc-prostate-mri-analysis

Jupyter Notebook

s5cmd-python-distributions

This project provides the infrastructure to build s5cmd Python wheels.

IDC-Viewer-Support

Resources to support OHIF Deployment

PyDicomVerify

This project is a tool for verification of Dicom files and attributes in python

idc-comppath-reproducibility

Classification of lung tumor slide images with the NCI Imaging Data Commons

Jupyter Notebook

tcia_download

Download TCIA collections to GCS (CORE REPO)

CloudFunctions

ThrottleProxy

RealtimeCosts

System for estimating realtime burn rates

libdicomicc

C library for using ICC profiles to correct color images

idc-views-sql

Several BQ tables are derived from the dicom_metadata and dicom_all BQ tables. In this repo you will find the SQL queries that were used to derive those tables

idc-pathomics-use-case-1

Initial IDC pathomics use case implementation

Jupyter Notebook

NLM-Visible-Human-Project-DICOM-Conversion

dcmqi-python-distributions

idc-radiomics-reproducibility

Transparent and Reproducible AI-based Medical Imaging Pipelines Using the Cloud.

Jupyter Notebook

TCIA-IDC-Coordination

Jupyter Notebook

CloudSegmentator

Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud

Jupyter Notebook

pywsidicom

idc-index-data

Python package providing the index to query and download data hosted by the NCI Imaging Data Commons