IPMI group at the UKE (@IPMI-ICNS-UKE)
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IPMI-ICNS-UKE

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Top repositories

1

gdl-fire-4d

General deep learning-based fast image registration framework for clinical thoracic 4D CT data
Python
38
star
2

multiscale

Multi-scale CNNs for histopathology image segmentation
Python
11
star
3

DeepTICI

Deep learning-based automated TICI (Thrombolysis In Cerebral Infarction) scoring for DSA-based assessment of mechanical thrombolysis response.
Python
8
star
4

4d-cbct-boosting

Python
6
star
5

respiratory-motion-prediction

Python
6
star
6

patch-performance

Don't waste your time and money on inefficient patch-based inference!
Python
5
star
7

sparsam

Deep Learning on SPARSely Annotated Medical-data
Python
5
star
8

inference-patch-sampling

5
star
9

CAPUT

Repository for the CAPUT dataset
4
star
10

4d-cbct-mc

Monte Carlo simulation of (4D) cone beam computed tomography
C
3
star
11

respiratory-signal-database

Python
3
star
12

DARTS

A Ca2+ microdomain analysis pipeline for spatio-temporal microscopy imaging
Python
3
star
13

crc1328-pythontutorial

Jupyter Notebook
2
star
14

TDEntropyDeconvolution

Spatio-temporal image restoration with entropy-based regularization for application to low-SNR fluorescence microscopy image series.
Python
2
star
15

ICNS-CoLD

Matlab source code for the ICNS CoLD@2PM (Cortical Layer Discrimination in 2-Photon Microscopy data) project
MATLAB
1
star
16

VignettingCorrection

Single image-based vignetting correction for improving the consistency of neural activity analysis in 2-photon functional microscopy
Python
1
star
17

Jurkat_cell_segmentation

First adoption of the reservoir paradigm for microscopy image data processing, here: T cell segmentation in live-cell Calcium image series.
Python
1
star
18

MPI-DVR

3D Direct Volume Rendering (DVR) for real time-capable 3D visualization of Magnetic Particle Imaging (MPI) data
Python
1
star