Explore @IGS Open Source projects

Institute for Genome Sciences (@IGS)

IGS

Stars
100
Global Org. Rank 57,955 (Top 19 %)
Registered over 13 years ago
Most used languages

Python
41.7 %

Perl
16.7 %

JavaScript
16.7 %

Julia
8.3 %

Jupyter Notebook
8.3 %

C++
8.3 %
Location 🇺🇸 United States
Country Total Rank 46,098
Country Ranking

Julia
505

Perl
3,081

C++
6,514

Jupyter Notebook
7,344

Chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

portal_client

Python-based client for downloading data made available through portals powered by the GDC-based portal system..

gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

FADU

Feature Aggregate Depth Utility

portal-api

API for the IGS data portal

portal-ui

UI for IGS project portals such as the HMP data portal found at https://portal.hmpdacc.org.

osdf-python

A Python OSDF (Open Science Data Framework) client

HMP_database_builder

Scripts to build the HMP database

unified-schema-ecosystem

osdf-nodejs-client

A node.js client for the Open Science Data Framework (OSDF)

rnaseq-pipeline

IGS Transcriptomics Pipeline

imp

IGS Metagenome Assembler