Human Brain Project (@HumanBrainProject)
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HumanBrainProject

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Top repositories

1

openMINDS

openMINDS comprises a set of metadata models for research products in the field of neuroscience.
Shell
40
star
2

hbp-neuromorphic-client

Python client for the Human Brain Project Neuromorphic Computing Platform
Python
39
star
3

neuroglancer-scripts

Conversion of neuroimaging data for display in Neuroglancer
Python
27
star
4

openMINDS_core

The openMINDS core metadata model is comprised of schemas that can be used to describe the general origin, location and content of research products.
20
star
5

ebrains-neuromorphic-job-queue-api

Code for the remote-access API of the EBRAINS/HBP Neuromorphic Computing Platform
Python
13
star
6

jsdoc-sphinx

JSDoc to ReST documentation, ready to be processed by Sphinx Doc
JavaScript
12
star
7

seafile-compose

A Docker Compose setup for Seafile
Dockerfile
10
star
8

openMINDS_SANDS

A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.
Python
10
star
9

pyunicore

UNICORE REST bindings for python
Python
9
star
10

pyxus

Python API for Nexus
Python
8
star
11

ebrains-drive

Python client interface for HBP Collaboratory Seafile storage
Python
8
star
12

openMINDS_controlledTerms

Metadata model for the consistent registration of well-defined terms as well as a corresponding library of terminologies (including links to ontological terms where applicable).
7
star
13

nehuba

TypeScript
6
star
14

kg-search

The knowledge graph search
Java
5
star
15

hbp-validation-framework

Python
5
star
16

swcPlus

Extended SWC neuron morphology file format
HTML
5
star
17

hbp-sphinx-theme

A Sphinx theme for doc integrated in the HBP Collaboratory
CSS
5
star
18

olfactory-bulb-3d

Python
5
star
19

kg-core-sdks

A python wrapper for the KG core API incl. token handling
HTML
5
star
20

hbp-data-schemas

Repository of data standards and schemas
4
star
21

landmark-reg

Landmark based registration of brain imaging volumes
JavaScript
4
star
22

kg-core

The KG core contains the fundamental logic to manage the Knowledge Graph.
Java
4
star
23

kg-search-ui

DEPRECATED! Search UI for Knowledge Graph
JavaScript
4
star
24

ep_oauth2

Etherpad Lite OAuth2 authentication provider based on passeport.js
JavaScript
4
star
25

openMINDS_generator

Python
4
star
26

hbp_archive

A high-level API for interacting with the Human Brain Project archival storage at CSCS
Python
4
star
27

openMINDS_ephys

A metadata model for capturing in-depth descriptions of electrophysiology experiments.
4
star
28

hbp-spatial-backend

An HTTP backend for transforming coordinates and data between the core template spaces of the HBP
Python
3
star
29

atlas_core_lib

Wrapper library for the atlas core rest api
Python
3
star
30

kg-editor

JavaScript
3
star
31

hbp-quickfire

HBP QuickFire's goal is to provide a set of useful react components that let you build a consistent user interface with very little boilerplate code.
JavaScript
3
star
32

angular-hbp-collaboratory

AngularJS services to interface with HBP Collaboratory
JavaScript
2
star
33

kg-query-builder

TypeScript
2
star
34

kg-query-api

A new query API for the Knowledge Graph
Java
2
star
35

neural-activity-resource

Code for the Neural Activity Resource
JavaScript
2
star
36

knowledgegraph

This is a repository to exchange information, ask questions, create issues and feature requests for the knowledgegraph of HBP.
2
star
37

hbp-service-client

Clients for HBP Collaboratory Services
Python
2
star
38

clb-gulp-angular-template

A Project template to build application for the HBP Collaboratory using Gulp and Angular 1.5
JavaScript
2
star
39

kg-statistics

UI and scripts for Nexus Graph Visualization
JavaScript
2
star
40

openMINDS_instances

The openMINDS_instances repository contains well defined metadata representations (JSON-LDs) that are most likely to be reused across different research products.
1
star
41

PyJuGEx

Python
1
star
42

neuromorphic-benchmarks-service

Python
1
star
43

hbp-collaboratory-doc-example

Example documentation project
JavaScript
1
star
44

ActionPerceptionCoupling

MATLAB
1
star
45

servicehub

Python
1
star
46

data-handling-tutorial

Jupyter Notebook
1
star
47

openMINDS_wizard

Openminds wizard
JavaScript
1
star
48

clb-jupyterhub-openshift

Python
1
star
49

secure-data-store

Helper scripts for managing GoCryptFS images
Python
1
star
50

clb-s2i-jupyterhub

Jupyterhub image based on s2i + cryptography package
1
star
51

morph-syn-val

JavaScript
1
star
52

neuroglancer-docker

Dockerized web server for Neuroglancer and pre-computed images
1
star
53

kg-service

DEPRECATED! core source code of kg-service - a scala play application for KG handling
Scala
1
star
54

kg-scripts

Python
1
star
55

clb-nb-utils

Collaboratory Jupyter Notebook Utils
Python
1
star
56

selenium-grid

Ansible playbook to create a selenium grid platform
Shell
1
star
57

clb-authenticator

Python
1
star
58

cortical-voluba

VoluBA backend for non-linear depth-informed alignment of cortical patches
Python
1
star
59

coallocation-slurm-plugin

M4
1
star
60

hbp-react-ui

A library of useful user-interface components built with React and MobX
JavaScript
1
star
61

hbp.hello.js

module to use HBP as a provider for hello.js
JavaScript
1
star
62

collaboratory_app

Collaboratory App Template for the CodeJam7
JavaScript
1
star
63

voluba-linear-backend

HTTP backend for estimating linear spatial transformations from a list of point landmarks
Python
1
star
64

hbp-collaboratory-theme

A Bootstrap 3 Theme for HBP Collaboratory Extensions
HTML
1
star
65

hbp-bsp-service-account

Rest API service allowing HBP Collaboratory developers to submit jobs, on behalf of HBP Collaboratory users, on HPC systems
Python
1
star
66

hbp-collaboratory-app-toolkit

A Javascript toolkit to interface a web application with the HBP Collaboratory
JavaScript
1
star
67

openMINDS_specimenPrep

A metadata model capturing in-depth descriptions of specimen preparations.
1
star
68

openid_http_client

The OpenId HTTP client manages the authentication of requests against token-protected API interfaces including the support of refresh token strategies.
Python
1
star
69

kujudrivespawner

A JupyterHub Spawner for Kubernetes which adds a Seadrive Sidecar container to the user's pod to mount the user's Collaboratory.Drive.
Python
1
star