HelmholtzAI-consultants-HMGU (@HelmholtzAI-Consultants-Munich)
Guthub

HelmholtzAI-Consultants-Munich

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

XAI-Tutorials

Self-explanatory tutorials for different model-agnostic and model-specific XAI methods
Jupyter Notebook
46
star
2

Quicksetup-ai

A flexible template, as a quick setup for deep learning projects in pytorch-lightning
Python
43
star
3

Automatic-Cell-Counter

A GUI based on napari for counting cells automatically in cell migration experiments
Python
39
star
4

fg-clustering

Explainability for Random Forest Models.
Jupyter Notebook
26
star
5

PySDDR

A python package for semi-structured deep distributional regression
Jupyter Notebook
20
star
6

oligo-designer-toolsuite

Develop custom oligo design pipelines.
Python
13
star
7

napari-organoid-counter

A napari plugin for counting organoids from brightfield microscopy images with deep learning
Python
9
star
8

data-centric-platform

A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches
Python
8
star
9

Particle-detection-in-3D-cellular-cryo-electron-tomograms

Deep learning based particle detection in 3D cellular cryo-electron tomograms
Python
3
star
10

ArtsyML

Code for blending people in images or videos with biological images using style transfer.
Python
2
star
11

EMcapsulins_segmentation

segmentation models for EMcapsulins segmentation
Python
2
star
12

Echo2Pheno

A deep learning application to uncover echocardiographic phenotypes
Jupyter Notebook
2
star
13

DimRed-Course

Material for the dimensionality reduction course
Jupyter Notebook
1
star
14

oligo-designer-toolsuite-AI-filters

AI plug-ins for the Oligo Designer Toolsuite package
Python
1
star
15

ArtsyML_app

HTML
1
star
16

AURORA

WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.
Python
1
star
17

Organoid-Counting

Python
1
star