Explore @GoekeLab Open Source projects

Göke Lab (@GoekeLab)

GoekeLab

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Location 🇸🇬 Singapore
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bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

awesome-nanopore

A curated list of awesome nanopore analysis tools.

bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

sg-nex-data

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Jupyter Notebook

m6anet

Detection of m6A from direct RNA-Seq data

proActiv

Estimation of Promoter Activity from RNA-Seq data

NanoporeRNASeq

Nanopore RNASeq data

bambu-singlecell-spatial

Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

ICGC_alternative_promoters

A pipeline for alternative promoter analysis.