Explore @GfellerLab Open Source projects

Computational Cancer Biology Lab (@GfellerLab)

GfellerLab

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179
Global Org. Rank 42,912 (Top 14 %)
Registered almost 8 years ago
Most used languages

R
53.8 %

C++
23.1 %

Perl
7.7 %

Jupyter Notebook
7.7 %

Python
7.7 %
Location 🇨🇭 Switzerland
Country Total Rank 1,462
Country Ranking

R
25

Perl
163

C++
254

Jupyter Notebook
1,275

Python
2,863

EPIC

Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

SuperCell

Coarse-graining of large single-cell RNA-seq data into metacells

MixMHC2pred

HLA-II ligand predictor.

MixMHCpred

HLA-I ligand predictor

PRIME

PRedictor of IMmunogenic Epitopes

MetacellAnalysisToolkit

Toolkit for metacell analysis

MoDec

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

PhosMHCpred

Predictor of Phosphorylated HLA-I ligands

MixMHCp

Tool for motif deconvolution in large HLA-I ligand datasets

SIB_workshop

Jupyter Notebook

MHCpExt

Identification of N- and C-terminal extensions in HLA-I ligands

EPIC-ATAC_manuscript

Code used for the analyses performed in the EPIC-ATAC manuscript

EPIC-ATAC