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@Gaius-Augustus

Gaius-Augustus

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BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Augustus

Genome annotation with AUGUSTUS

GALBA

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

MakeHub

Fully automated generation of UCSC assembly hubs

Tiberius

deep learning gene finder

learnMSA

Learning and Aligning Large Protein Families (MSA-HMM)

Jupyter Notebook

VARUS

RNA-Seq sampling

GUSHR

Generating UTRs from SHort Reads

GeometricHashing

Global, Highly Specific and Fast Filtering of Alignment Seeds

PeptImprove

Pipeline for fully automated prokaryotic genome annotation with peptide data from MS/MS experiments

taxonomy

Taxonomy database and related questions, e.g. closest taxon in a given set

pygustus

Python wrapper for AUGUSTUS.