Explore @Gaius-Augustus Open Source projects

@Gaius-Augustus

Gaius-Augustus

Stars
790
Global Org. Rank 17,646 (Top 6 %)
Registered almost 6 years ago
Most used languages

Python
45.5 %

C++
27.3 %

Perl
18.2 %

Jupyter Notebook
9.1 %

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Augustus

Genome annotation with AUGUSTUS

GALBA

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

MakeHub

Fully automated generation of UCSC assembly hubs

clamsa

ClaMSA (Classify Multiple Sequence Alignments).

VARUS

RNA-Seq sampling

learnMSA

Learning and Aligning Large Protein Families (MSA-HMM)

Jupyter Notebook

GUSHR

Generating UTRs from SHort Reads

GeometricHashing

Global, Highly Specific and Fast Filtering of Alignment Seeds

PeptImprove

Pipeline for fully automated prokaryotic genome annotation with peptide data from MS/MS experiments

pygustus

Python wrapper for AUGUSTUS.

taxonomy

Taxonomy database and related questions, e.g. closest taxon in a given set