EBI Functional Genomics Group (@Functional-Genomics)
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Functional-Genomics

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Top repositories

1

scrnaseq_python_2023

Materials for the EBI course "Single-cell RNA-seq analysis using Python 2023"
Jupyter Notebook
6
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2

CATD_snakemake

Snakemake pipeline for benchmarking cell-type deconvolution methods as well as deconvoluting real bulk RNA-seq data with the use of scRNA-seq datasets
R
5
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3

BENGAL

Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
Python
5
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4

pancancer

Pancancer related code and aux. data.
R
4
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5

eQTL

eQTL analysis pipeline
Python
4
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6

scGOclust

Gene ontology terms to compare single cell RNA-seq data
R
3
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7

atlas_gsa

Gene set analysis based on fisher exact test
R
2
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8

CATD

CATD: Critical Assessment of Transcriptomics Deconvolution
R
1
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9

scOntoMatch

R
1
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10

BENGAL_reproducibility

BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data
Jupyter Notebook
1
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