@FOI-Bioinformatics
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FOI-Bioinformatics

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  • Stars
    star
    63
  • Global Org. Rank 71,712 (Top 23 %)
  • Registered over 7 years ago
  • Most used languages
    Python
         83.3 %
    C
         16.7 %
  • Location ๐Ÿ‡ธ๐Ÿ‡ช Sweden
  • Country Total Rank 2,625
  • Country Ranking
    Python
         328
    C
         1,381

Top repositories

1

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Python
64
star
2

CanSNPer2

CanSNPer2: A toolkit for SNP-typing bacterial genomes.
Python
5
star
3

nanometa_live

Workflow and GUI for real-time species classification and pathogen characterization of nanopore sequence reads.
Python
3
star
4

STARPS

A simulation tool for cultivation of bacterial populations
C
1
star
5

metaquest

MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
Python
1
star
6

cansnper1.1

CanSNPer1.1: A toolkit for SNP-typing using NGS data. Copyright (C) 2016 Adrian Lรคrkeryd Updates done by David Sundell VERSION 1.1.0 (Adjusted to python 3, python 2 support is depricated) This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
Python
1
star