@ErillLab
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ErillLab

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  • Stars
    star
    21
  • Global Org. Rank 116,262 (Top 37 %)
  • Registered almost 12 years ago
  • Most used languages
    Python
         91.7 %
    Scheme
         8.3 %

Top repositories

1

collectf

CollecTF database implementation
Python
5
star
2

gpu_pssm

A GPU-based implementation of sliding window PSSM scoring.
Python
4
star
3

cgb

comparative genomics of transcriptional regulation in Bacteria
Python
2
star
4

Markov_DNA_gen

A Markov Model DNA sequence generator to generate pseudo-replicate sequences based on an input sequence
Python
2
star
5

tAI

tRNA adaptation index
Python
1
star
6

FLEMINGO

A project to generate models of regulated bacterial promoters using genetic programming
Python
1
star
7

ViPhy

Virus Phylogeny System
Python
1
star
8

SPA

Code and data used to perform the tAI analysis in deCarvalho et al. (2023)
Scheme
1
star
9

vibrio-biofilm-formation

In silico analysis of promoter architecture for biofilm formation genes involved in Vibrio cholerae
Python
1
star
10

pHunter

Python second-order approximation to the PromoterHunter code
Python
1
star
11

control_seq_gen

Generates control sequences for motif analysis. Goal is to maintain the statistical parameters of the input sequences (i.e. nucleotide composition) without recapitulating the sites of interest.
Python
1
star
12

LPEG_phages

Code and data for the analysis of TF-binding sites positional entropy in phage genomes, used in Mascolo et al. (2022)
Python
1
star