Erasmus Medical Center (@ErasmusMC-Bioinformatics)
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ErasmusMC-Bioinformatics

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  • Stars
    star
    29
  • Global Org. Rank 101,313 (Top 33 %)
  • Registered over 9 years ago
  • Most used languages
    Python
         27.3 %
    R
         18.2 %
    SCSS     9.1 %
    Shell
         9.1 %
    JavaScript
         9.1 %
    TeX
         9.1 %
    HTML
         9.1 %
    Nextflow     9.1 %
  • Location 🇳🇱 Netherlands
  • Country Total Rank 7,297
  • Country Ranking
    Nextflow     5
    SCSS     186
    R
         432
    TeX
         526
    Python
         1,860
    Shell
         2,050
    HTML
         2,999
    JavaScript
         6,988

Top repositories

1

WeFaceNano

Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
Python
12
star
2

galaxytools-emc

Tool Shed repositories maintained and developed by the Erasmus University Medical Center, following best practices guidelines set out by the Intergalactic Utilities Commission https://wiki.galaxyproject.org/IUC
Python
3
star
3

galaxy-mothur-toolset

All information pertaining to the Galaxy Mothur Toolkit (GMT) project
Python
2
star
4

NextFlow-VC-pipeline

WGS data analysis pipeline in nextflow and singularity
Nextflow
1
star
5

Argalaxy-ImmuneRepertoire

Argalaxy Immune Repertoire pipeline
R
1
star
6

galaxy-courses

Galaxy course documents and templates
TeX
1
star
7

AMR-Galaxy-workflows

Workflows for WMDI - By Astrid Heikema & EMC Bioinformatics Team
Shell
1
star
8

ARGalaxy-docker

Docker image that sets up a Galaxy with the Immune Repertoire and SHM pipelines.
HTML
1
star
9

benchAMRking

SCSS
1
star
10

iobio_containers

Clin.iobio and gene.iobio dockerized.
JavaScript
1
star
11

shm_csr

Somatic hypermutation and class switch recombination pipeline
R
1
star