Emergent Behaviors in Biology (@Emergent-Behaviors-in-Biology)
Guthub

Emergent-Behaviors-in-Biology

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  • Stars
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    117
  • Global Org. Rank 53,682 (Top 18 %)
  • Registered about 6 years ago
  • Most used languages
    Jupyter Notebook
         80.0 %
    Mathematica     10.0 %
    Python
         10.0 %

Top repositories

1

mlreview_notebooks

Notebooks for "A high bias low-variance introduction to Machine Learning for physicists."
Jupyter Notebook
65
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2

community-simulator

Simulate microbial community batch culture experiments.
Jupyter Notebook
40
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3

scTOP

A package for identifying cell phenotype from single-cell RNA-sequencing data.
Jupyter Notebook
3
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4

typical-random-ecosystems

This is the code accompanying the manuscript: Cui, Wenping, Robert Marsland III, and Pankaj Mehta. "Diverse communities behave like typical random ecosystems." arXiv:1904.02610 (2019).
Mathematica
2
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5

crossfeeding-transition

Code and data to accompany Marsland et al. (2018) "Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities"
Jupyter Notebook
2
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6

microbiome-patterns

Scripts and data to accompany Marsland, Cui and Mehta "A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns," bioRxiv 622829 (2019)
Jupyter Notebook
1
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7

proj_push_pull

Jupyter Notebook
1
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8

species-packing-bound

Cavity method with linear resource dynamics
Jupyter Notebook
1
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9

metabolic-homology

Predict community composition in novel environments using metabolic homology
Python
1
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10

covid19

Jupyter Notebook
1
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