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Deplancke's Lab (@DeplanckeLab)

DeplanckeLab

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Location 🇨🇭 Switzerland
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BRB-seqTools

Suite of tools for processing BRB-seq data

ASAP

ASAP : Automated Single-cell Analysis Pipeline

ChromatinHD

High-definition modeling of chromatin + transcriptomics data

Live-seq

Chromatin_modules

Chromatin Modules across cell types.The code

Jupyter Notebook

SSPCI

Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

Areg

Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells

BeversLitovchenko2018

Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"

DisCo_source

ChromatinHD_manuscript

Frochaux_BouSleiman_2020

SmartSeq2

SIB-ASAP-2023

Using ASAP for Single-Cell Analysis - 2023 Course