toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.dsub
Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.terra-ui
Web user interface for the Terra platformleonardo
Notebook serviceterra-docker
job-manager
Job Manager API and UI for interacting with asynchronous batch jobs and workflows.terra-interoperability-model
Common data model proposal for biomedical research intended to facilitate and encourage data sharing and reuseterra-workspace-manager
jade-data-repo
The Terra Data Repository built by the Jade team.topmed-workflows
a place for topmed workflowsterra-cli
data-browser
data-explorer
consent
Broad Institute Data Use Oversight Systemdata-portal
duos-ui
Broad Institute Data Use Oversight Systemconsent-ontology
Broad Institute Data Use Oversight Systemterra-notebook-utils
Utilities for the Terra notebook environment.bgzip
Fast streams for block gzip files.terra-examples
Examples for use in data analysis.azul
Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGPgetm
Concurrent reads of HTTP URL addressed dataterra-landing-zone-service
analysis_pipeline_WDL
Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.hca-ingest
terra-app
FHIR
Broad FHIR is a FHIR Server that powers applications for Genomics research.sync-github-labels
Synchronize Github issue and PR labels between two repositoriesterra-cloud-resource-lib
terra-resource-buffer
Terra Resource Buffering Serviceterra-external-credentials-manager
terra-axon-examples
Example notebooks and documentation for working with the Terra Axon UI.terra-billing-profile-manager
terra-workspace-data-service
terra-java-project-template
herzog
Version control, test, and CI/CD your Python Jupyter notebooks.jade-data-repo-ui
UI for the Jade Data Repodata-explorer-indexers
bard
Metrics collection serviceconsent-data-use
encode-ingest
Batch ETL pipeline to mirror ENCODE data into the Jade Data Repository.welder
clinvar-ingest
Batch ETL pipeline to mirror ClinVar releases into the Jade Data Repository.xsamtools
Lightly modified versions of htslib and bcftools to merge VCF streams.terra-policy-service
data-store
AWS and GCP data storage system for genomic data.calhoun
Notebook preview serviceterra-azure-relay-listeners
consent-ui
Broad Institute Data Use Oversight Systemcommons-sample-data
A repo to track various TOPMed and other datasetsgithub-actions
Data Biosphere GitHub Actionswdl-conformance-tests
topmed-workflow-variant-calling
saturn-ui-prod-deploy
Terra UI automated prod deploy servicecbas
biocore-data-model
BioCore Data Modeltanagra
Repo for the Tanagra service being developed by the All of Us DRCterra-aws-resource-discovery
firecloud-app
terra-drs-hub
terra-axon-ui
Repository for the Terra "Axon" UIkernel-service-poc
featured-notebooks
dos-azul-lambda
Provides access to DSS azul-index in the Data Object Service schemasrex
Survey response serviceterra-gcs-bq-streaming-functions
stairway
Stairway saga transaction processor libraryterra-resource-janitor
Janitor service to cleanup resources created by Cloud Resource Library (CRL)ssds
Simple data storage system for AWS and GCPexample-authz-registry
example of maintaining authorization list via github + travis + s3transporter
Bulk file-transfer system for data ingestnewt-transformer
Amphibious new data transformer to prepare various sources for CGP DSS Data Loaderlyle
Test user allocation servicebard-client
JavaScript library for shared client-side analytics across DSPbond
Account linking serviceenv-base
Base framework environment k8s resourceshca-metadata-api
A library for processing HCA metadata programmaticallydata-store-auth
data-store authentication infra managementjava-pfb
terra-azure-arm-templates
saturn-terraform
Terraform definitions for all Saturn-managed repos and GCS projectsmetadata-serialization
Serializing metadata for use and reuse ✒️📋🗃️💻hamm
Cloud Cost Management Servicewdl-parsers
A package that provides the generated ANTLR4 WDL parsers for Python.saturn-documentation
bdcat-integration-tests
This supports integration testing between components for the biodata catalyst grant.terra-folder-manager
hca-import-validation
A utility to validate a staging area before it is imported.terra-test-runner
terra-data-catalog
data-platforms
Components of the Commons Alliancecbas-ui
findable-ui
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