Kim Lab at UT Southwestern Medical Center (@DaehwanKimLab)
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DaehwanKimLab

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  • Stars
    star
    858
  • Global Org. Rank 17,035 (Top 6 %)
  • Registered about 5 years ago
  • Most used languages
    C++
         60.0 %
    Python
         30.0 %
    Jupyter Notebook
         10.0 %

Top repositories

1

hisat2

Graph-based alignment (Hierarchical Graph FM index)
C++
473
star
2

centrifuge

Classifier for metagenomic sequences
C++
246
star
3

tophat

Spliced read mapper for RNA-Seq
C++
90
star
4

hisat

Fast spliced aligner with low memory requirements
C++
40
star
5

hisat-genotype

Python
23
star
6

seqwho

SeqWho - A reliable and rapid FASTQ(A) file classifier
Python
9
star
7

hisatgenotype_db

HISAT-genotype's database for human genes or genomic regions
5
star
8

Chromosome-ReAD

Chromosome-Recurrent Abnormality Detector (ReAD) is a neural network for automatically identifying structural rearrangements important in hematology oncology.
Jupyter Notebook
4
star
9

lcc

life function compiler
Python
3
star
10

tophat2

tophat2 is exactly the same source as tophat (just naming convention), so please use tophat (https://github.com/infphilo/tophat)
3
star
11

UnrealCell

Biology data visualization framework in Unreal Engine 4
C++
2
star
12

SEClass

C++
1
star