@CostaLab
Guthub

CostaLab

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

reg-gen

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Python
100
star
2

CrossTalkeR

R package to do the Ligand Receptor Analysis Visualization
Jupyter Notebook
41
star
3

scMEGA

scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
R
32
star
4

scopen

scOpen: single-cell open chromatin analysis via NMF modelling
Python
22
star
5

scrna_seurat_pipeline

comprehensive analysis of single-cell transcriptomics data
R
19
star
6

MOJITOO

MOJITOO: a fast and universal method for integration of multimodal single cell data
R
10
star
7

PILOT

Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Python
9
star
8

sc2marker

Surface Marker Detection Using Single Cell Data
HTML
8
star
9

scopen-reproducibility

A repository to include all scripts and codes for reproducibility of scOpen manuscript
HTML
6
star
10

CimpleG

CimpleG, an R package to find (small) CpG signatures.
R
4
star
11

phlower

Use hodge decomposition for trajectory analysis
Python
3
star
12

RNA_Expression_Analysis_in_Python

Jupyter Notebook
2
star
13

practical_SS2015

Bioinformatics Lab RWTH Aachen SS '15
Python
2
star
14

SOSE_2021

A repository of materials for the SOSE2021 course of CostaLab
Shell
2
star
15

condcomp

An R package for analysis of data conditions in scRNA-seq.
R
1
star
16

pyCrossTalkeR

Jupyter Notebook
1
star
17

dream-challenge

The code and data for the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
Python
1
star
18

phlower-reproducibility

Source code for the reproducibility of the PHLOWER manuscript
R
1
star