CIBIV - Center for Integrative Bioinformatics Vienna (@Cibiv)
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Cibiv

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  • Stars
    star
    326
  • Global Org. Rank 30,265 (Top 10 %)
  • Registered almost 12 years ago
  • Most used languages
    Python
         27.3 %
    C++
         18.2 %
    HTML
         18.2 %
    TeX
         18.2 %
    R
         9.1 %
    C
         9.1 %
  • Location 🇦🇹 Austria
  • Country Total Rank 449
  • Country Ranking
    TeX
         26
    C++
         40
    HTML
         67
    R
         104
    C
         350
    Python
         1,139

Top repositories

1

IQ-TREE

Efficient phylogenomic software by maximum likelihood
C++
177
star
2

NextGenMap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.
C++
84
star
3

Teaser

A tool to benchmark mappers and different parameters within minutes
HTML
41
star
4

trumicount

Correctly counting molecules using unique molecular identifiers (UMIs)
TeX
9
star
5

BODscore

Scoring method for identified SNPs
C
4
star
6

Cibiv.github.io

CIBIV website
HTML
3
star
7

gwpcR

Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments
R
3
star
8

ModelRevelator

Python
1
star
9

cibiv-beamer-template

CIBIV latex beamer template base on mtheme (https://github.com/matze/mtheme)
TeX
1
star
10

zone-net

Neural Network predicting if the underlying tree of a given MSA is a Farris- or Felsenstein-like tree
Python
1
star
11

EvoNAPS

EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.
Python
1
star