Computational Systems Oncology (@CSOgroup)
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CSOgroup

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  • Stars
    star
    50
  • Global Org. Rank 79,704 (Top 26 %)
  • Registered over 6 years ago
  • Most used languages
    Python
         45.5 %
    R
         45.5 %
    Groovy
         9.1 %
  • Location 🇨🇭 Switzerland
  • Country Total Rank 3,142
  • Country Ranking
    R
         63
    Groovy
         88
    Python
         1,081

Top repositories

1

CALDER

R
19
star
2

cellcharter

A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
Python
18
star
3

CALDER2

CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hierarchical organization and obtain sub-compartments; (3) compute nested sub-domains within each chromatin domain from short-range contacts.
R
18
star
4

TAD-benchmarking-scripts

Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.
R
10
star
5

Donaldson-et-al-scripts

A public repository containing the scripts regarding analyses in Donaldson, Sungalee, Zufferey, Tavernari et al.
R
3
star
6

scrnaseq_pipeline

Python
3
star
7

GridQuant

Gridding framework for quantification and statistical analyses of spatially-resolved protein expression from high resolution images
R
2
star
8

CALDER_workflow

Scalable pipeline for the computation of compartment domains based on Hi-C data using CALDER
Python
1
star
9

WGD

Analysis code for "Whole genome doubling drives oncogenic loss of chromatin segregation"
Python
1
star
10

Lymphomoid-IF-pipeline

Python
1
star
11

TLS-finder

A pipeline to detect Tertiary Lymphoid Structures in-situ from CD20 immunofluorescence staining images.
Groovy
1
star