Explore @CSB-IG Open Source projects

Computational Systems Biology/Integrative Genomics (@CSB-IG)

CSB-IG

Stars
32
Global Org. Rank 96,131 (Top 31 %)
Registered over 10 years ago
Most used languages

R
50.0 %

Jupyter Notebook
12.5 %

Python
12.5 %

Shell
12.5 %

SCSS 6.3 %

HTML
6.3 %
Location 🇲🇽 Mexico
Country Total Rank 1,334
Country Ranking

R
19

SCSS 149

Shell
239

Jupyter Notebook
378

HTML
952

Python
1,040

tmr_search

Transcriptional Master Regulator search in Cancer, a pipeline using MARINa

rnw

regulation network workflow

SGCCA

Functional impact of multi-omic interactions in breast cancer subtypes

WordStringFreq

Tools for Word and String Frequency Counts for Data / Literature Mining in R

pa3bc

Pathway Analyses of Apoptosis and Autophagy on Breast Cancer

miRNAseq_rnw

miRNAseq regulatory networks

RNA-seq

Pipeline for RNA-seq data

literature

Data mining, mostly medline. Text mining. Network based analyses.

circos_rnaseq_tcga_brca

Circos plots of rnaseq interactions in tcga brca samples.

curso_redes_2019-2

Material para el curso "Estructura y dinámica de redes biológicas"

Update-R-with-packages

NinNX

Network Analysis Tool Kit

CSB-IG.github.io

Back-to-basics

Jupyter Notebook

breast_cancer_networks

Breast cancer studies

parallel-aracne

Pipeline for using aracne in INMEGEN cluster.

adjtoadjmatrix

Script to convert an adj file (parallel aracne output) to an adjmatrix (upper triangle)

Arabidopsis_TMR

Transcriptional Master Regulators of mild drought in growing Arabidopsis leaves

pychromnet

Functions to create coarse-grained gene networks at chromosomal level in python.

Jupyter Notebook