snakemake_rnaseq

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

small-rna-seq-pipeline

A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data

protocols

Protocols for molecular biology, bioassays, metabolite analysis, etc.

shiny_rnaseq_app

An Shiny application to explore RNA-seq results produced from the laboratory on tomato. Web application is private under password protection (please request access).