Explore @Biomedical-Imaging-Group Open Source projects

Biomedical Imaging Group (@Biomedical-Imaging-Group)

Biomedical-Imaging-Group

Stars
203
Global Org. Rank 40,086 (Top 13 %)
Registered over 6 years ago
Most used languages

Java
43.8 %

Jupyter Notebook
18.8 %

MATLAB
18.8 %

Python
12.5 %

JavaScript
6.3 %
Location 🇨🇭 Switzerland
Country Total Rank 1,509
Country Ranking

MATLAB
23

Java
149

Jupyter Notebook
945

JavaScript
1,333

Python
1,438

GlobalBioIm

A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

DeconvolutionLab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

OrientationJ

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

PSFGenerator

A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)

interactive-kit

A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

image-access

A class for the didactic implementation of image-processing algorithms in JavaScript.

EDF-Extended-Depth-of-Field

An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

Steer-n-Detect

ImageJ plugin - Steerable Template Detector

Continuous_FRC_SMLM

Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

Multi-Kernel-Regression-gTV-

The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"

PureDenoise

CryoEM-Joint-Refinement

Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

IPLABs-distribution-2023

Jupyter Notebook

mij

MIJ Matlab-ImageJ connector

SingleCellClassifier

Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

Jupyter Notebook

Generating-Sparse-Processes

Jupyter Notebook