Explore @Biomatters Open Source projects

Biomatters Open Source (@Biomatters)

Biomatters

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IntelliComment

No more alt-tabbing between Bitbucket and your IDE! Review pull requests and comment on them from inside the Jetbrains IDE family (IntelliJ, Webstorm etc). IntelliComment takes the most recent pull request associated with a git branch and downloads the associated comments, presenting them in a side panel. Users can reply and post their own comments from inside their favourite Jetbrains IDE. The IntelliComment plugin was developed inBiomatters as part of a 24 hour evolab coding challenge.

Azimuth

Python 3 version of https://github.com/MicrosoftResearch/Azimuth for use by Geneious Prime

geneious-example-lims-connector

An example plugin for connecting Geneious Prime to a LIMS system such that sequences can be submitted and retrieved

barcode-validator

A tool for validating sequence data for a barcode record before submission to GenBank

geneious-eupathdb

Provides services to search for genes in all of the EuPathDB databases. EuPathDB (formerly ApiDB) is an integrated database covering the eukaryotic pathogens in many genera.

geneious-species-delimitation

The Species Delimitation Plugin an exploratory tool that allows you to assess putative species in phylogenetic trees. The plugin summarises measures of phylogenetic support and diagnosability of species defined as user-selected collections of taxa on user-supplied trees. Plugin by Brad Masters, Vicky Fan and Howard Ross.