Explore @BioSystemsUM Open Source projects

BioSystems@CEB - Centre of Biological Engineering (@BioSystemsUM)

BioSystemsUM

Stars
248
Global Org. Rank 35,979 (Top 12 %)
Registered about 7 years ago
Most used languages

Jupyter Notebook
58.8 %

Python
29.4 %

R
11.8 %
Location 🇵🇹 Portugal
Country Total Rank 492
Country Ranking

Jupyter Notebook
16

R
34

Python
73

DeepMol

DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

MEWpy

Metabolic Engineering Workbench

propythia

Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

Jupyter Notebook

troppo

Reconstruction algorithms for Python

Jupyter Notebook

cobamp

Constraint-based modeling framework for the enumeration of pathway analysis concepts

Jupyter Notebook

ReactEA

ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

biotmpy

Jupyter Notebook

DeepSweet

A Machine and Deep Learning pipeline to classify sweetness

Jupyter Notebook

s2m2

Materials for the Summer School in Metabolic Modeling - 2024 edition

Jupyter Notebook

drug_response_pipeline

BioCatalyzer

BioCatalyzer: a rule-based tool to predict compound metabolism

specmine

biomeneco

A project to accelerate gap-filling of metabolic models

deepmol_case_studies

Case Studies from the DeepMol Publication

Jupyter Notebook

bRNAsPipe

Pipeline for RNAseq analysis in Bash and scripts for microarray gene expression analysis in R

bit-analysis

BiGG Integration Tool Analysis

Jupyter Notebook

merlinv4_paper

Models analysis for merlin's version 4 submission on Nucleic Acid Research

Jupyter Notebook

human_ts_models

A repository for tissue-specific model reconstructions using troppo

Jupyter Notebook