Biomedical Informatics Research and Data Science @ Dartmouth (@BMIRDS)
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BMIRDS

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  • Stars
    star
    621
  • Global Org. Rank 20,847 (Top 7 %)
  • Registered almost 6 years ago
  • Most used languages
    Python
         100.0 %
  • Location 🇺🇸 United States
  • Country Total Rank 13,580
  • Country Ranking
    Python
         2,215

Top repositories

1

deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Python
483
star
2

HistoGAN

Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.
Python
73
star
3

3dMRISegmentation

Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."
Python
33
star
4

medical-image-preprocessing

Functions for pre-processing large images
Python
9
star
5

WSI-PLP

DPool; Previously POPPSlide: Patient Outcome Prediction Pipeline using Whole Slide Images
Python
8
star
6

titan-rtx-benchmark

5
star
7

MORE

Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.
Python
5
star
8

Slide2Graph

Graph Convolutional Networks for Whole-Slide Analysis in PyTorch
Python
4
star
9

DifficultyTranslation

Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.
Python
1
star