Explore @AndersenLab Open Source projects

Andersen Lab (@AndersenLab)

AndersenLab

Stars
252
Global Org. Rank 35,650 (Top 12 %)
Registered over 11 years ago
Most used languages

R
30.0 %

Nextflow 17.5 %

Python
15.0 %

HTML
15.0 %

Shell
10.0 %

OpenEdge ABL 7.5 %

Perl
2.5 %

Roff 2.5 %
Location 🇺🇸 United States
Country Total Rank 25,976
Country Ranking

Nextflow 22

OpenEdge ABL 95

Roff 463

R
1,418

Perl
1,463

Shell
3,019

HTML
6,147

Python
7,261

VCF-kit

VCF-kit: Assorted utilities for the variant call format

IBiS-Bootcamp

cegwas2-nf

GWA mapping with C. elegans

Genetic-Analysis

pyPipeline

Andersen Lab Python-based pipeline for variant calling.

liftover-utils

Utilities for lifting over genome coordinates in C. elegans

CeNDR

CAENDR

CellProfiler

CellProfiler Image Analysis Tools

cegwas

Pipeline for performing GWAS mappings with C. elegans phenotype data

dry-guide

The Guide to Computing in the Andersen Lab

andersenlab.github.io

Andersen Lab Website

Ce-328pop-div

HawaiiMS

easyXpress

easyXpress is an R package for the analysis and visualization of high-throughput image-based nematode data

Coding_Resources

NemaScan

GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

BZRNA-seq-nf

Benzimidazole RNA-Seq and smRNA-Seq Pipeline

post-gatk-nf

Subset isotype-only vcf, build tree etc. steps after variant calling and isotype assignment

code_club

C.-elegans-Benzimidazole-Resistance-Manuscript

This repo contains all data, scripts, and outputs (figures and tables) associated with this manuscript.

protocols

Andersen Lab protocols

NOAA

Integrating NOAA with C.elegans wild isolate data

hisat2-pipeline

Pipeline for generating hisat2 reference

wormbase-api

impute-nf

bam-toolbox

noaa-nf

easyfulcrum

Ce-PopGen

denovo-concordance

De novo concordance pipeline using minihash

Hawaii_Manuscript

alignment-nf

A nextflow pipeline for genome sequences alignment

Transposons2

microPub_chemotaxis

Data, scripts, and figures for chemotaxis micro publication

chemotaxis-cli

sv-nf

A nextflow pipeline to call structural variants using short or long read data

wi-gatk

The new GATK-based pipeline for wild isolate C. elegans strains

annotation-nf

Annotate VCF with snpeff and bcsq

GMVK

Gene Model Visualization Tools (GMVT) is a suite of R functions used to visualize gene models and variant annotations

ril-nf

Andersen-Knowledge-Base

sfs-dfe

mmp-telseq

Code for analyzing telomere length from million mutations project using telseq

DauerSRG3637

Repository for dauf-1 QTL paper

cellprofiler-nf

A nextflow pipeline to run CellProfiler pipelines on raw images and process output

CePopulationGenetics-nf

archive of Stefan Z. CePopulationGenetics-nf repo with Tim C. edits