Explore @AndersenLab Open Source projects

Andersen Lab (@AndersenLab)

AndersenLab

Stars
252
Global Org. Rank 35,574 (Top 12 %)
Registered over 11 years ago
Most used languages

R
30.0 %

Nextflow 17.5 %

HTML
15.0 %

Python
15.0 %

Shell
10.0 %

OpenEdge ABL 7.5 %

Perl
2.5 %

Roff 2.5 %
Location 🇺🇸 United States
Country Total Rank 25,976
Country Ranking

Nextflow 19

OpenEdge ABL 104

Roff 525

R
1,400

Perl
1,465

Shell
2,995

HTML
6,157

Python
7,277

VCF-kit

VCF-kit: Assorted utilities for the variant call format

IBiS-Bootcamp

cegwas2-nf

GWA mapping with C. elegans

Genetic-Analysis

pyPipeline

Andersen Lab Python-based pipeline for variant calling.

liftover-utils

Utilities for lifting over genome coordinates in C. elegans

CeNDR

CAENDR

CellProfiler

CellProfiler Image Analysis Tools

cegwas

Pipeline for performing GWAS mappings with C. elegans phenotype data

andersenlab.github.io

Andersen Lab Website

dry-guide

The Guide to Computing in the Andersen Lab

Ce-328pop-div

HawaiiMS

easyXpress

easyXpress is an R package for the analysis and visualization of high-throughput image-based nematode data

Coding_Resources

NemaScan

GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

BZRNA-seq-nf

Benzimidazole RNA-Seq and smRNA-Seq Pipeline

post-gatk-nf

Subset isotype-only vcf, build tree etc. steps after variant calling and isotype assignment

code_club

C.-elegans-Benzimidazole-Resistance-Manuscript

This repo contains all data, scripts, and outputs (figures and tables) associated with this manuscript.

protocols

Andersen Lab protocols

NOAA

Integrating NOAA with C.elegans wild isolate data

hisat2-pipeline

Pipeline for generating hisat2 reference

wormbase-api

impute-nf

bam-toolbox

noaa-nf

easyfulcrum

Ce-PopGen

denovo-concordance

De novo concordance pipeline using minihash

Hawaii_Manuscript

alignment-nf

A nextflow pipeline for genome sequences alignment

Transposons2

microPub_chemotaxis

Data, scripts, and figures for chemotaxis micro publication

chemotaxis-cli

sv-nf

A nextflow pipeline to call structural variants using short or long read data

wi-gatk

The new GATK-based pipeline for wild isolate C. elegans strains

annotation-nf

Annotate VCF with snpeff and bcsq

GMVK

Gene Model Visualization Tools (GMVT) is a suite of R functions used to visualize gene models and variant annotations

ril-nf

Andersen-Knowledge-Base

sfs-dfe

mmp-telseq

Code for analyzing telomere length from million mutations project using telseq

DauerSRG3637

Repository for dauf-1 QTL paper

cellprofiler-nf

A nextflow pipeline to run CellProfiler pipelines on raw images and process output

CePopulationGenetics-nf

archive of Stefan Z. CePopulationGenetics-nf repo with Tim C. edits