10x Genomics (@10XGenomics)
Guthub

10XGenomics

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  • Stars
    star
    1,650
  • Global Org. Rank 10,901 (Top 4 %)
  • Registered about 10 years ago
  • Most used languages
    Rust
         50.0 %
    R
         9.4 %
    Python
         9.4 %
    C++
         9.4 %
    Go
         9.4 %
    Jupyter Notebook
         6.3 %
    C
         3.1 %
    TeX
         3.1 %

Top repositories

1

cellranger

10x Genomics Single Cell Analysis
Rust
357
star
2

vartrix

Single-Cell Genotyping Tool
Rust
199
star
3

rust-boomphf

Fast and scalable minimal perfect hashing for massive key sets
Rust
129
star
4

loupeR

Convert Seurat objects to 10x Genomics Loupe files.
R
95
star
5

single-cell-3prime-paper

R
83
star
6

subset-bam

Rust
66
star
7

supernova

10x Genomics Linked-Read Diploid De Novo Assembler
C++
64
star
8

rust-debruijn

De Bruijn graphs in Rust
Rust
63
star
9

bamtofastq

Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
Rust
59
star
10

scHLAcount

Count HLA alleles in single-cell RNA-seq data
TeX
58
star
11

rust-pseudoaligner

Single-Cell RNA-seq pseudo-aligner
Rust
50
star
12

rust-shardio

Out-of-memory sorting of large datasets map / reduce style processing
Rust
47
star
13

enclone

VDJ Clonotyping & Analysis Tools
Rust
46
star
14

rust-toolbox

Rust utility code
Rust
32
star
15

HumanColonCancer_VisiumHD

Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
R
32
star
16

longranger

10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
Python
30
star
17

lariat

Linked-Read Alignment Tool
Go
28
star
18

single-cell-3prime-snp-clustering

Python
22
star
19

rust-bwa

Rust wrapper of the BWA C API
Rust
18
star
20

cellranger-atac

Python
16
star
21

scan-rs

Single-cell analysis methods in Rust
Rust
15
star
22

fastq_set

Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
Rust
14
star
23

orbit

Rust wrapper for STAR aligner
C
14
star
24

janesick_nature_comms_2023_companion

Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
Jupyter Notebook
14
star
25

thermite

Spliced short read aligner implemented in Rust
Rust
8
star
26

websummary

Generate an HTML report in Rust
Rust
5
star
27

analysis_guides

10x Genomics analysis guides files
Jupyter Notebook
5
star
28

enclone_ranger

Core components for enclone
Rust
4
star
29

supernova-chili-pepper

C++
2
star
30

rules_conda

Bazel rules for creating conda environments
Go
1
star
31

louvain

Louvain graph clustering
C++
1
star
32

cellranger-dna

Single Cell DNA Copy Number Profiling
Go
1
star