๐ฌ๐ง Made in United Kingdom
Discover United Kingdom's Leading Open Source Projects: Explore top-notch open source initiatives hailing from the vibrant tech community of United Kingdom.
TOP Perl Projects
duncs/clusterssh
Cluster SSH - Cluster Admin Via SSH
mysociety/fixmystreet
This is mySociety's popular map-based reporting platform: easy to install in new countries and regions
aspiers/stow
GNU Stow - mirror of savannah git repository occasionally with more bleeding-edge branches
FelixKrueger/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Ensembl/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
do-know/Crypt-LE
Crypt::LE - Let's Encrypt / Buypass / ZeroSSL and other ACME-servers client and library in Perl for obtaining free SSL certificates (inc. generating RSA/ECC keys and CSRs). HTTP/DNS verification is supported out of the box, EAB (External Account Binding) supported, easily extended with plugins, easily dockerized.
sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
davidpepper/fierce-domain-scanner
Fierce.pl Domain Scanner
zaf/asterisk-speech-recog
Speech recognition script for Asterisk that uses google's speech engine.
newsnowlabs/dockside
Dockside is a tool for provisioning lightweight access-controlled IDEs, staging environments and sandboxes - aka 'devtainers' - on local machine, on-premises raw metal or VM, or in the cloud
multiplay/lancache
Dynamically Cache Game Installs at LANโs using Nginx
zaf/asterisk-googletts
Asterisk AGI script that uses Google's translate text to speech service.
MarkWheadon/velocity-painting
#VelocityPainting: patterning 3D prints by modulating the print speed
kud/jpegrescan
JPEGrescan: losslessly shrink any JPEG file - YOU PROBABLY SHOULD USE MozJPEG https://github.com/mozilla/mozjpeg
jimeh/manservant
Browse man pages in style with your personal manservant.
manwar/perlweeklychallenge-club
Knowledge base for The Weekly Challenge club members using Perl, Raku, Ada, APL, Awk, Bash, BASIC, Bc, Befunge-93, Bourne Shell, BQN, Brainfuck, C3, C, CESIL, C++, C#, Clojure, COBOL, Coconut, Crystal, D, Dart, Dc, Elm, Emacs Lisp, Erlang, Excel VBA, Fennel, Fish, Forth, Fortran, Gembase, GNAT, Go, Haskell, Haxe, HTML, Idris, IO, J, Janet, Java, JavaScript, Julia, Kotlin, Lisp, Lua, M4, Miranda, Modula 3, MMIX, Mumps, Myrddin, Nim, Nix, Node.js, Nuweb, OCaml, Odin, Ook, Pascal, PHP, Python, Postscript, Prolog, R, Ring, Ruby, Rust, Scala, Scheme, Sed, Smalltalk, SQL, Swift, Tcl, TypeScript, Visual BASIC, WebAssembly, Wolfram, XSLT and Zig.
rghose/kill-close-wait-connections
Kills all TCP CLOSE_WAIT connections
broquaint/Gitalist
A modern git web viewer
dreamcat4/docker-images
Dreamcat4's Docker Images (Trusted Builds)
shabble/irssi-scripts
Repo to store some personal irssi scripts
abw/Template2
Perl Template Toolkit v2
robinbowes/flac2mp3
flac2mp3 is a tool to convert audio files from flac to mp3 format including the copying of tags.
shabble/irssi-docs
In-depth documentation of the Irssi IRC Client
Ensembl/ensembl-rest
Language agnostic RESTful data access to Ensembl data over HTTP
aspiers/mysqldiff
tool and CPAN suite backend for comparing MySQL database schemas
ryancdotorg/ssh-chain
jimdigriz/freeradius-oauth2-perl
FreeRADIUS OAuth2 (OpenID Connect) using rlm_perl
Ensembl/VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
gustavmaskowitz/apachebuddy.pl
Not written by me, no longer maintained by me : Apachebuddy.pl
sujaikumar/assemblage
Tools for working with second gen assemblies, fasta sequences, etc
JeremyJones/Apachetop
Apachetop is a console-based tool for monitoring the threads and overall performance of a set of Apache web servers, using the server-status information pages in Apache.
SionBayliss/PIRATE
A toolbox for pangenome analysis and threshold evaluation.
wtsi-hgi/docker-proxify
Allows building and running docker container images from behind a corporate proxy
HariSekhon/DevOps-Perl-tools
25+ DevOps CLI Tools - Anonymizer, SQL ReCaser (MySQL, PostgreSQL, AWS Redshift, Snowflake, Apache Drill, Hive, Impala, Cassandra CQL, Microsoft SQL Server, Oracle, Couchbase N1QL, Dockerfiles), Hadoop HDFS & Hive tools, Solr/SolrCloud CLI, Nginx stats & HTTP(S) URL watchers for load-balanced web farms, Linux tools etc.
saiftynet/GUIDeFATE
GUI Design From A Text Editor
Ensembl/ensembl
The Ensembl Core Perl API and SQL schema
castaway/dbix-class-book
DBIx::Class book
shangshanzhizhe/Work_flow_of_population_genetics
ๆด็ๅธธ็จ็็พคไฝ้ไผ ๅญฆๅๆๆต็จๅ่ๆฌ
brunopostle/ifcmerge
A three-way-merge tool for IFC files
eprints/eprints
EPrints 3.3 core and releases
HariSekhon/Templates
DevOps Templates for Kubernetes, AWS, GCP, Terraform, Docker, Jenkins, CircleCI, GitHub Actions, Lambda, AWS CodeBuild, GCP Cloud Build, Vagrant, Puppet, Python, Bash, Go, Perl, Java, Scala, Groovy, Maven, SBT, Gradle, Make, Jenkinsfile, Makefile, Dockerfile, docker-compose.yml, Vagrantfile, M4 etc...
leonward/OpenFPC
OpenFPC, Open Source Full Packet Capture
cancerit/ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
tk2/RetroSeq
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.
HariSekhon/Spotify-tools
Spotify Tools - Playlists Backups, Spotify CLI, URI translator, duplication detection / removal, API search queries, API automation etc.
Ensembl/ensembl-pipeline
*DEPRECATED* Job management for the Ensembl Genebuild pipeline
cancerit/BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
denny/ShinyCMS
ShinyCMS is an open source CMS. This is the Perl version, built with Catalyst and DBIC. (There is also a Ruby on Rails version: www.github.com/denny/ShinyCMS-ruby)
manwar/Design-Patterns
Design Pattern using Modern Perl.
jacquesg/p5-Git-Raw
Perl bindings to the Git linkable library (libgit2)
sanger-pathogens/assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
davorg/perlwebbook
A book. About Perl. And the Web.
hildebra/lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
cancerit/cgpBattenberg
Battenberg algorithm and associated implementation script
kjolley/BIGSdb
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
alecsammon/kpcli
Keepass Cli
laurieburchell/open-lid-dataset
Repository accompanying "An Open Dataset and Model for Language Identification" (Burchell et al., 2023)
tobyink/p5-type-tiny
Perl 5 distribution Type-Tiny; see homepage for downloads and documentation.
Ensembl/ensembl-hive
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
Robertof/perl-www-telegram-botapi
Perl implementation of the Telegram Bot API
Ensembl/ensembl-compara
The Ensembl Compara Perl API and SQL schema
FelixKrueger/SNPsplit
Allele-specific alignment sorting
acme/git-pureperl
A Pure Perl interface to Git repositories
manwar/perl-cool-snippets
Collection of Perl cool snippets.
nsoranzo/sspace_basic
SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension
abw/Template-TT3
A working prototype of the TT3 template language
jonlives/nagios-jenkins-plugin
A nagios plugin for which lets you check jenkins jobs according to various criteria.
helloandre/cr48
my programs that i've put on cr48
meermanr/TVSeriesRenamer
Script for renaming files in a digital video collection. Automatically fetches episode titles from the web.
metomi/fcm
๐จ FCM: a modern Fortran build system + wrappers to Subversion for scientific software development
ox-it/mac-scripts
lukeredpath/LRMocky
A port of jMock 2.0 for Objective-C
evadne/LESS.mode
LESS syntax mode for SubEthaEdit and Coda
barbie/perl-jam
Perl Jam - a book about organising conferences
bigpresh/Dancer-Plugin-Database
Dancer::Plugin::Database - easy database support for Dancer applications
ebi-wp/webservice-clients
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.
njh/perl-net-sdp
Perl Module : Session Description Protocol (rfc2327)
LuRsT/vspark
๐ Like spark, but vertical
Ensembl/plant-scripts
Scripting analyses of genomes in Ensembl Plants
okubax/dotfiles-old
i3 with simple conky bar on ArchLinux
sleekweasel/CgiAdbRemote
Mini webserver for controlling UNROOTED Android devices via a web browser.
CxOrg/mysql-sync
Syncs two mysql databases by only inserting/deleting/updating the necessary records.
smfreegard/DecodeShortURLs
SpamAssassin DecodeShortURLs plug-in repository
Ensembl/ensembl-tools
Ensembl tools
VertebrateResequencing/vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
saiftynet/Wordle
A command Line wordle clone
robinbowes/net-udap
Net::UDAP is a Perl module to configure the Logitech SqueezeBox Receiver (SBR) from a PC, i.e. without requiring a SqueezeBox Controller (SBC)
tobyink/docs-modern-oop
felixr/urxvt-theme-switch
urxvt plugin that allows to switch color themes during runtime
davidcarlisle/latexcgi
LaTeX server via perl cgi script, developed for learnlatex.org
josephhughes/Sequence-manipulation
A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
BigRedS/postfixadmin-installer
Script to install a Postfix/Dovecot/Mysql system and the postfixadmin web UI
gingerbeardman/dd-gui
A simple GUI for the dd command line utility under Mac OS X
ashb/trycatch
'Native' try {} catch {} semantics for perl using Devel::Declare
OliverBoy/Luna
Club Penguin Server Emulator - AS2 Protocol
eprints/eprints3.4
EPrints 3.4 core and releases
StevenWingett/HiCUP
Hi-C data processing pipeline
cancerit/cgpPindel
Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
Ensembl/ensembl-variation
The Ensembl Variation Perl API and SQL schema
DrHyde/CPANdeps
CPANdeps